Building a Windows Service and Website on a single TFS build

I have a website, a windows service, and some shared class libraries in a single Visual Studio solution. I use Octopack on both the website and windows service, and on my machine these build work as expected.

When using the TFS Build Server, the website nuget package is generated as expected, but the windows service nuget package contains all files from the website, as well as the service. E.g. it includes the _PublishedWebsites folder as well.

This is because TFS uses a single location to build projects.

What is the best way around this?